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What are the exact steps to reproduce this issue?
Create an automation the sends email, perhaps triggered by an update to a table. Create a standard automation flow to iterate through all rows changed in the trigger. Create an event to send an email using a new or established SMTP integration. Test and publish the automation. Open your table and modify a row to fire the trigger. Wait for your email. Open the automation again. Modify the SMTP configuration. In my case I used an entirely different SMTP server. Save the integration. Make sure the new integration (if you have more than 1) is selected in the automation. Test and publish. Open your table, modify row and wait for email.
It will not be using the new SMTP server settings from integration update. It will be using the original settings. The only way I have found to change SMTP settings is to delete the SMTP integration, create a new one and change on all automations that use it.